Course material

Day 1

• • Slides Proteomics summer school: intro (Maarten Dhaenens)

• • Slides Sample preparation part 1 (An Staes)

• • Slides Sample preparation part 2 (Kris Gevaert)
  • Slides Data dependent acquisition: the basics and instrument design (An Staes)

Day 2

• • Slides Protein identification (Lennart Martens)

• • Tutorial Bioinformatics for proteomics (Lennart Martens)

• • Software (Lennart Martens)

Day 3

• • Slides Data independent acquisition: the basics (Maarten Dhaenens)

• • Slides Data independent acquisition: the basics (version of An Staes)

• • Slides Other acquisitions: MRM/PRM/… (An Staes)

• • Slides DIA: Data structure and analysis (Maarten Dhaenens)

Day 4

• • All material can be found on the Statomics GitHub (Lieven Clement)

Day 5

• • Slides Proteomics applications: overview (An Staes)
  • Slides Proteomics applications: protein modifications (Kris Gevaert)
  • Slides Proteomics applications: protein-protein interactions (Kris Gevaert)
  • Slides Proteomics applications: proteogenomics (Gerben Menschaert)