Course material

This material belongs to a Summer school with face-to-face sessions.

Wifi info for Bio-Accelerator

Day 1

• • Slides Sample preparation (Francis Impens)

• • Slides Data dependent acquisition: the basics and instrument design (An Staes)

Day 2

• • Slides Protein identification (Lennart Martens)
  • Tutorial Bioinformatics for proteomics (Lennart Martens)
  • Software (Lennart Martens)
  • Slides DDA ID practical III MaxQuant (Daria Fijalkowska) 
  • Tutorial DDA ID practical III MaxQuant (Daria Fijalkowska)
  • Input data for MaxQuant practical (Daria Fijalkowska)
  • Full results of the MaxQuant practical (Daria Fijalkowska)
  • Software installation instructions (Windows only) (Daria Fijalkowska)

Day 3

• • Slides DIA: basic principles (An Staes)
  • Slides DIA: Data analysis (An Staes)
  • Tutorial: DIA(-NN) data analysis practical (An Staes and Maarten Dhaenens)
  • Software installation instructions (Windows only) (An Staes)
  • Publication on Orbitrap data set (An Staes)
  • Publication on timsTOF data set (An Staes) 

Day 4

• • All material can be found on the Statomics GitHub (Lieven Clement)

Day 5

• • Slides Proteomics applications: N-terminal proteomics (Kris Gevaert)
    
  • Slides Proteomics applications: Proteogenomics (Gerben Menschaert) 
  • Slides Proteomics applications: AP-MS (Sven Eyckerman) 
  • Slides Proteomics applications: Spatial proteomics (Simon Devos)
  • Slides Proteomics applications: MS-based single cell proteomics (Marcel Bühler)
  • Slides Proteomics applications: Clinical proteomics (Esperanza Fernandez)