Bar codes and library prep
Check out this short video explaining the principle of 10x Genomics library prep: The libraries that are obtained are subjected to Illumina sequencing (the same platform that is used for bulk RNASeq). If you want to know how Illumina sequencing works check out this lesson of the NGS introduction course. Variations on the 10x genomics […]
RoseTTAFold on the HPC
Online Accessiblity
The RoseTTAFold pipeline
The data set used in the training
Plotting the info in the Seurat object
Contributors to the code: Clint De Nolf, Sam Dupont, Jana Roels.
VIBFold on the HPC
AlphaFold on the HPC
Online accessibility
Lesson
The AlphaFold pipeline
Introduction to AlphaFold
Lesson 1
Checking the quality of the mapping
Checking the quality of the mapping
Mapping RNA reads
Slides for this session.
Improving the quality of the data
Slides for this lesson
Quality control of FASTQ files
Slides for this lesson
NGS workflows
Slides for this lesson
Illumina data formats
Slides for this lesson
