Vectors
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Creating variables
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Comparisons in R
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Basic syntax in R
Slides for this lesson Demo script for this lesson Quotes indicate text Every value that is written in between quotes and that does not have a date format is interpreted as character (text) in R. Single or double quotes? Both are ok to indicate text or dates: single and double quotes have the same meaning […]
Rstudio user interface
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R?
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Simple statistical tests in Prism
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The Prism user interface
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Course schedule
Scater: quality control of the cells
Why not use Seurat to filter outlier cells? Seurat uses hard cutoffs to remove cells, e.g. cells with less than 200 or more than 2500 expressed genes are filtered (see Seurat tutorial). Scater is more sophisticated, it provides functions for simple calculation of quality metrics finds outliers using relative measures (nMADs) finds outliers using combinations […]
Introduction
Simulations as tool in Experimental Design
Slideshow: Exercises: https://hwcourses-expdesign01.netlify.com/
Practical Randomization, Blocking and Confounding
Slideshow: Exercises: https://hwcourses-linearmodelsforexperimentsnetliflycom.netlify.com/ https://hwcourses-expdesign01.netlify.com/
From knowledge about variability to optimal design
The basis
Online tools for motif searches
How to increase accuracy of motif searches?
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Motif analysis: Where to find known motifs?
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What’s the biology behind a list of genes: motifs they have in common?
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